F-F is only supporting v9t9 sector images at the moment, so no copy protection is represented in those images anyway. I'm not sure how prevalent are pc99 track images? I'm also unclear on how much the track layout represented within pc99 images actually matters -- the layout seems prescribed and most parsers choke if they don't see the exact expected layout. Not much scope for handling copy protections there either, if that's the case.
For current support, just try various sizes of v9t9/dsk image and see what works and what doesn't.